rs27862304 SNP Detail

Summary

• ID
  rs27862304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TAGAAAAGAA CCAAGGCTGC AAACATGACA TACAGCAATA
  CTTCTGGAGC CGCAGCGCCT GAGAAACTCT TATAAACTGT CTTGGAGAAC TGGTTTATGC
  Y
  TTGAAGACAA TTCAAGTAGC CCTCTGGATA GTTAACTTTC TCGGGAGTGG ATATTTTTTC
  TTGTTGAAAC CAAAGACTCC CATTATTACC TGCACATTTG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37998237	NES09442906	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	T	T	T	T	T	T	T	C
ss146251735	ENSMUSSNP85150	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27862304					SNP	T	T	C	T	C	T	C	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37998237	NES09442906	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	572 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	899 bp upstream
Tssr37060	transcription start site region 37060	913 bp upstream
Tssr37061	transcription start site region 37061	925 bp upstream
Tssr37062	transcription start site region 37062	958 bp upstream
Tssr41531	transcription start site region 41531	810 bp downstream
Tssr41532	transcription start site region 41532	916 bp downstream
Tssr41533	transcription start site region 41533	1002 bp downstream
Tssr41534	transcription start site region 41534	1120 bp downstream