rs27862305 SNP Detail

Summary

• ID
  rs27862305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGCTCC AAGGATTTAG
  AGCCATGATG AACAGATAGC CAATAGTGCC CATGGCCCTT AGACTAGGGC CATTTTCCTC
  ATGGGGTGGA TTCAGACATG ACAGGTAAGG AGGGGGATAG CAGATGTAAC TCTTCAACCC
  GGTAGAAAAG AACCAAGGCT GCAAACATGA CATACAGCAA TACTTCTGGA GCCGCAGCGC
  Y
  TGAGAAACTC TTATAAACTG TCTTGGAGAA CTGGTTTATG CTTTGAAGAC AATTCAAGTA
  GCCCTCTGGA TAGTTAACTT TCTCGGGAGT GGATATTTTT TCTTGTTGAA ACCAAAGACT
  CCCATTATTA CCTGCACATT TGGTCTGTTT CTTTTAGTTG CCCCTTCAAA TGCCAGGTAA
  GACAAAGACG CTGGCTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37998238	NES09442904	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27862305					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37998238	NES09442904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	614 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	941 bp upstream
Rr100958	regulatory region 100958	within coordinates
Tssr37060	transcription start site region 37060	955 bp upstream
Tssr37061	transcription start site region 37061	967 bp upstream
Tssr37062	transcription start site region 37062	1000 bp upstream
Tssr41531	transcription start site region 41531	852 bp downstream
Tssr41532	transcription start site region 41532	958 bp downstream
Tssr41533	transcription start site region 41533	1044 bp downstream
Tssr41534	transcription start site region 41534	1162 bp downstream