rs27862307 SNP Detail

Summary

• ID
  rs27862307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCAGAAA GCCCAACCTG
  AAAACCTACA GAAACAAGAT TACTCTTCTG TCAGCTCCAG CTCCAAGGAT TTAGAGCCAT
  GATGAACAGA TAGCCAATAG TGCCCATGGC CCTTAGACTA GGGCCATTTT CCTCATGGGG
  TGGATTCAGA CATGACAGGT AAGGAGGGGG ATAGCAGATG TAACTCTTCA ACCCGGTAGA
  R
  AAGAACCAAG GCTGCAAACA TGACATACAG CAATACTTCT GGAGCCGCAG CGCCTGAGAA
  ACTCTTATAA ACTGTCTTGG AGAACTGGTT TATGCTTTGA AGACAATTCA AGTAGCCCTC
  TGGATAGTTA ACTTTCTCGG GAGTGGATAT TTTTTCTTGT TGAAACCAAA GACTCCCATT
  ATTACCTGCA CATTTGGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37998240	NES09442900	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	G	A	A	A	G	A	A
ss146251717	ENSMUSSNP6212057	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27862307					SNP	A	A	G	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37998240	NES09442900	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	668 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	995 bp upstream
Rr100958	regulatory region 100958	36 bp proximal
Tssr37060	transcription start site region 37060	1009 bp upstream
Tssr37061	transcription start site region 37061	1021 bp upstream
Tssr37062	transcription start site region 37062	1054 bp upstream
Tssr41531	transcription start site region 41531	906 bp downstream
Tssr41532	transcription start site region 41532	1012 bp downstream
Tssr41533	transcription start site region 41533	1098 bp downstream
Tssr41534	transcription start site region 41534	1216 bp downstream