rs27862313 SNP Detail

Summary

• ID
  rs27862313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45318730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTACAAAA CCTAGCGGGA ATCATTACAC CTTTTCCGGC
  TTCCTGGGCA TGTGGTCCTG CACAGGGCAA TGAGAATGAA CCCAGTGTGT GGTGAATATG
  Y
  AGGACAAGTG ACGATGAGAC AGTCATCAAC TCAGTCAGCC TGGACCTCAA AGGTGATGTC
  TCCTAGGGCT GAGGACACAG CTCCAAACAG GAACACCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37998246	NES09442887	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	T	C	C		C	C	T	C		C
ss146251666	ENSMUSSNP6704757	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss321102351	CHEV_4_45331602	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27862313					SNP	T	T	C	C	C	C	C	C	T	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37998246	NES09442887	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45318730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	1302 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	1629 bp upstream
Rr100958	regulatory region 100958	670 bp proximal
Tssr37060	transcription start site region 37060	1643 bp upstream
Tssr37061	transcription start site region 37061	1655 bp upstream
Tssr37062	transcription start site region 37062	1688 bp upstream
Tssr41531	transcription start site region 41531	1540 bp downstream
Tssr41532	transcription start site region 41532	1646 bp downstream
Tssr41533	transcription start site region 41533	1732 bp downstream
Tssr41534	transcription start site region 41534	1850 bp downstream