rs27862315 SNP Detail

Summary

• ID
  rs27862315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45318626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACTGCTC TTGTAGGGGA
  CCCAGCTTTG GTTTCTAGCA CCCGTGTAGC TGCTCACAAC CTGTCATAAC TCAAGTTTCA
  GGGGACCTGA CCTTCCTGTC TGACCTCCAC AAGAAGCTGT CACACAGCGT GCAAAAACAT
  ACATGTAGGC ACACTTTCCT GTGCATACTT TAAAAATGCC TTGTAAGTCC CCACTGTTGT
  R
  GGTGATTACA AAACCTAGCG GGAATCATTA CACCTTTTCC GGCTTCCTGG GCATGTGGTC
  CTGCACAGGG CAATGAGAAT GAACCCAGTG TGTGGTGAAT ATGCAGGACA AGTGACGATG
  AGACAGTCAT CAACTCAGTC AGCCTGGACC TCAAAGGTGA TGTCTCCTAG GGCTGAGGAC
  ACAGCTCCAA ACAGGAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ
ss37998248	NES09442883	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ
rs27862315					SNP	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37998248	NES09442883	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45318626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	1406 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	1733 bp upstream
Tssr37060	transcription start site region 37060	1747 bp upstream
Tssr37061	transcription start site region 37061	1759 bp upstream
Tssr37062	transcription start site region 37062	1792 bp upstream
Tssr41531	transcription start site region 41531	1644 bp downstream
Tssr41532	transcription start site region 41532	1750 bp downstream
Tssr41533	transcription start site region 41533	1836 bp downstream
Tssr41534	transcription start site region 41534	1954 bp downstream