rs27862627 SNP Detail

Summary

• ID
  rs27862627
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45128680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGGCCA GCCTGTTCTA
  TAAAGCAAGT TCCAGGAGAG CCAAGGCTAC ACAGAGAAAC CCTGTGACTC AAAAACAAAC
  AACAAACAAA AAACTTTAAT ATATTTTATG TGTATAAATG TTCTGCCTGT ATCTCTGTGT
  ATTTGGTGCC CTTGGGGGTC AGAGAAGGGC ACTGAATCCC CTGGAACAGG ACAGAGAGAA
  K
  TTTACAAAGC TCCCAGATGA AGAACAACAG GGAGTCAGGG GTTGATGGTG GAGGGAGAAT
  CAGGTCACCC AGTCCCAAGC AGTCAGCCCT AAGCTCATAT ACATGCAAGT AACACCAAGC
  AGACTCAGTG GGTTCTGTTT GTCTGTCCAC TCATCTAGCT CCTACTGCGT GGGTGCATAT
  GTGTGCGTGT GTGTGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37999254	NES09451211	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27862627					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37999254	NES09451211	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45128680 () rs orientation: forward

Symbol	Name	Function Class
D4Mit1006	DNA Segment, Chr 4, Massachusetts Institute of Technology 1006	594 bp distal
Tssr37053	transcription start site region 37053	1767 bp upstream