rs27862628 SNP Detail

Summary

• ID
  rs27862628
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45128259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGTGC AGGGGAAGCA
  TTTTTATTAT GTTTCTTATA CTAAGAGATT TTAATTTAAT GGGTAAGGTG TGGAAAGTGT
  CCCTTCAAGG ATGCGACTGA TGATGGAAGA GACTCATGGG CAGTTCTGAG GAAAGGACAC
  CATTTCTTAA CCTAAAGGGC AGGCACAGAG GTGGTTGCTT TTTTTTTTTT TTAACTGTGA
  M
  CAAATATTTT ATACACAATT TCACATACAG AATACAGTTT ATAATTAAAA AAGTAAAAAG
  AGTTTTTCTT CAATTCTGTC CATTAATTCC TTTCTGGAAT CAACTAGTAC TAACAATTTA
  TTTGTTTTTT AAAAAATCCT TATTAATTTA CCTGGGCAGT GTTGATACAT GCCTTTAATT
  TGCTGCACTG GGGAGACAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37999255	NES09451234	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27862628					SNP	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37999255	NES09451234	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45128259 () rs orientation: forward

Symbol	Name	Function Class
D4Mit1006	DNA Segment, Chr 4, Massachusetts Institute of Technology 1006	173 bp distal