rs27862629 SNP Detail

Summary

• ID
  rs27862629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45128232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACACACAC AGAGTCACAC
  ATGGGATGGG GGGGTGCAGG GGAAGCATTT TTATTATGTT TCTTATACTA AGAGATTTTA
  ATTTAATGGG TAAGGTGTGG AAAGTGTCCC TTCAAGGATG CGACTGATGA TGGAAGAGAC
  TCATGGGCAG TTCTGAGGAA AGGACACCAT TTCTTAACCT AAAGGGCAGG CACAGAGGTG
  R
  TTGCTTTTTT TTTTTTTTAA CTGTGAACAA ATATTTTATA CACAATTTCA CATACAGAAT
  ACAGTTTATA ATTAAAAAAG TAAAAAGAGT TTTTCTTCAA TTCTGTCCAT TAATTCCTTT
  CTGGAATCAA CTAGTACTAA CAATTTATTT GTTTTTTAAA AAATCCTTAT TAATTTACCT
  GGGCAGTGTT GATACATGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37999256	NES09451233	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27862629					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37999256	NES09451233	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45128232 () rs orientation: forward

Symbol	Name	Function Class
D4Mit1006	DNA Segment, Chr 4, Massachusetts Institute of Technology 1006	146 bp distal