rs27862633 SNP Detail

Summary

• ID
  rs27862633
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45127372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCACCTC TATTGTCCTT
  CTGTCACCAG AATTTTGGAT CTCCATCTCT ACTTCCATAG CCATGGGGTT TGAAGTAGTC
  CCCTCCCCCA GCTCTAGTGG CTGGTTGTAA GTAAGGGGCT CTGTCCTTTG TTGTGGAAAT
  GACCCCTAAT GTCTGGTCAA TTCTGGTGAG CAAACTTATA CATCTCTGCC ATCTCTAGCA
  R
  GCCTGGTTAG CACACTACTT ATCTTTGGGG TCCTTTGGAG GCAGGGTTCT ACTTTGTGTG
  GCTTAGTGCC TACTAAGCAA ATCTGTAAGG AAGACCTGTA TAACATCAAC TCTATTATTT
  CACGTTTCCT CTATATCAGA CATACACATA TGTAGGACAT ACATGATTGT AGCACGGTTA
  CACGCGCATA TGGGATGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37999260	NES09451291	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	A	G	G
ss45723370	mCV23123530	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss146249843	ENSMUSSNP7165355	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27862633					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37999260	NES09451291	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45127372 () rs orientation: forward

Symbol	Name	Function Class
D4Mit1006	DNA Segment, Chr 4, Massachusetts Institute of Technology 1006	565 bp proximal