rs27862638 SNP Detail

Summary

• ID
  rs27862638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45126259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACACTGG AACCCTGTCT
  GGAAACCAGT TCTGGATATG CTGCTAGGAC CCTAGCTTTC TTTTAAAAGT CATTCCTGGG
  AACTGACAGA TGGAAAACAA ACAACAATCT CGCTAAATCC AAGGGACAGT AGATTCATAA
  CTTTATAGTA ATGACAGGAA CATGGAGAGT ATTTAAATTC TAATAAAAAC GGCTAAAATG
  Y
  ACTTTAGGCA GCTTGTATTC TAGGCCTTGC CTGCCCTGAG AGCTTTTAAG GCATTATCTT
  CTTTAATTCT CCCATAATTC TTTCGGCATG GGTATTATGT ATTATTATCC CAGTTTTATA
  GATGGATATT ATTACACCTC AACCTTACAC GGTAGTTTCT GGCCAAATAT CCAGTTGCTA
  CTTAATGTCC CTGTTTAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37999265	NES09451498	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27862638					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37999265	NES09451498	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45126259 () rs orientation: forward

Symbol	Name	Function Class
D4Mit1006	DNA Segment, Chr 4, Massachusetts Institute of Technology 1006	1678 bp proximal