rs27871409 SNP Detail

Summary

• ID
  rs27871409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48193659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCCAAGG ATAAATGACC
  TTGGCCTATA GCACCACACC CAGGCCCTGA GGAGAGCCAA TTTAGAGCCT GCCTGACCTC
  TGGCACTGGG ATTCCTGATA TAACGTGAAG AGTCTTCTCC CTCTGCTCCT ATCTCTGGCA
  TCAGCAAGGC CTGGCAGGGA CCTTCTGACT GCCCACTGCA GGCGTGGGGA ACCAGGGAAG
  Y
  GAGGGGAACG CCCTCTAACA ATCCTAGACA GTTGATGACA GAAGAATGTA AAACGCTTGT
  TCCTCAACAT CTTTGCTTTT GATCTACAGA ACAATAACAA AACTACAAAA GACAGGAGGG
  GACTTACAAT AATTGAAATA CAGTTTTTCT TTGAAAATGA AAATTTCTAG ACAGAGAAAG
  CCTTAAAATG TCTAGTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37986344	NES09449408	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	T	C	T
ss45621145	mCV23195975	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss146276850	ENSMUSSNP6860019	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27871409					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986344	NES09449408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48193659 () rs orientation: forward

Symbol	Name	Function Class
Erp44	endoplasmic reticulum protein 44	within coordinates