rs27872290 SNP Detail

Summary

• ID
  rs27872290
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46332619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATAGATC AGATCTGCTG
  CCTGGAGGAT GGTACTATCA TGGTTCCAGG TTGCTAAGAC ATCCAGGGAG CAGTCTGCTA
  CCTGACTGCA AGTCCTTTCA CATGCATAGG GAACACTTTC CAGAACAGAT CATGATCATG
  CACTGGGCAA CAAAACAAGC TCCAATATAC TTTATTGGTT TTCTTTATAC TGTATGTTTT
  S
  ATCCTATTTT TCCCTTTCCT CAGCTCTTCC CAGATCCTCT CCCTCTCCCC CTTCCCCCTC
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG CACGTGCGAA
  AAATAAAGTC AAAATATTCC ACAAAAAAAA TGCCCACAAA ATACATAGAG TCCCTCACGG
  GCATGGGGCC TGCCCTGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37993330	NES09454284	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27872290					SNP	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993330	NES09454284	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46332619 () rs orientation: forward

Symbol	Name	Function Class
D4Mit89	DNA segment, Chr 4, Massachusetts Institute of Technology 89	27 bp proximal
Gm12446	predicted gene 12446	within coordinates