rs27873122 SNP Detail

Summary

• ID
  rs27873122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68260371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTATCCAT AAGTTCTGTG
  ACTCTAGAGA ACCCTAAATA ATATAATACA TAACCTCATT TCTAAAAAAA AAAAAAATTG
  CTCTAAGCTG AACAGTCCAG GCGAGCTAAA AATTTCAAGC CTTTTTCTGA GAGTTCTTTT
  CCTGAATGTT CTCTAAGTGT ATAAACATAT GTTAGAGCAC TTGTTTGTTT ATTCACTTGC
  Y
  GCTCTATTTT TGTTGTTACT GAGGCTACAG AGCTAATTAC TCAGAGCTAA ACAAAAAATA
  GTAATAAGGT TTTCTTTTTC CAATTTTTTT TTCAACTCCT ATTGGCAGAA TTCTGACCCC
  AGCCCTCTTC AAGGACACTG TTTAGGTCCA TTCTCCTCCA AGAAAATGCA TGTTAAATTG
  CAATCAACTG GTAACAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38036245	NES09361955	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	T	C	T	C
ss146487545	ENSMUSSNP279862	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27873122					SNP	T	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38036245	NES09361955	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68260371 () rs orientation: forward

Symbol	Name	Function Class
Rr376643	regulatory region 376643	240 bp downstream
Rr376644	regulatory region 376644	901 bp upstream