rs27873124 SNP Detail

Summary

• ID
  rs27873124
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68259358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAAAAA TCAGACTAGA
  TCCTTATGTC ATTCATGACA TCAAATATAG TCTGTGTAGA TAATTGAGGA AGTCAAATAT
  TTGGCTCTAA TGCTATTTTT ATTTTTAAAA GGATTTCTCA GAACAAGTCA TAATCTATAC
  TCTCAGTCCC ATCAAATTCA GATATAAAAT AAACTACATG AGGTATATCT GTGACTCAAC
  S
  AACCCCAAAG TCAACTAAAT TCCACAAAGC ATTCACTGTG TCTCCAATCA TTATAACGGC
  TTGTTTGCTC AATGTTACAG AAGAAGAGAA GATTAGTAGA ATATAAGTAC AAAATATGTC
  ACTTTGGCAT AGCAGTGATT TCAAGAGAAG ATGATTGGTT TAAAGTAGAT TAAAAAGAAA
  GCTCTCTGAC ACTTCTTAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38036247	NES09362016	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C		C	C	C	G	C	G	C
ss45643090	mCV24164773	ABI	CRAMUS_MOUSE	f	SNP	G	G	C				C	C
ss146487506	ENSMUSSNP2366885	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27873124					SNP	G	G	C	C	C	C	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38036247	NES09362016	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68259358 () rs orientation: forward

Symbol	Name	Function Class
Rr376643	regulatory region 376643	within coordinates
Rr376644	regulatory region 376644	1914 bp upstream