rs27875925 SNP Detail

Summary

• ID
  rs27875925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:44381132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATCCTCA AATATGAATG
  TCCATTACAG TGATCTGGGG GATAATATTG ATAAATGAGC CCCACCCTAG ACATTCTGCC
  TAACTTGGTC GATCGGGCAG GGAATGTACA TGTGTGCTCT TAAAAAGCCT CTCTTGAGGG
  CTGGGTTCCA GTCACACTTA TTCTCCCTGG TTTATGGAAG GCAAATGAAT ATTCAGTGTT
  Y
  TGTAGAAGAT ACAGAGATCC TTTACAAATA TTTAAATTCT GTTCTAAATT TTTATTTTTT
  TGTGTGATAT GGTGTGTGTG TGTGTGTGTG TGTGTGTAAG AGTTGGGTTC TCTGGGACTG
  GAGTTATAGA TATTTGTAGC TGCCATGTGG GTTCTGGGAA TTGAACTCAG GTCCAGCAGG
  GGTTACATAG TGAGACTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38002348	NES09462285	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	T		T	T	C	T		T
ss321100988	CHEV_4_44394004	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27875925					SNP	C	T	C	C	C	C	C	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38002348	NES09462285	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44381132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14212	CpG island 14212	368 bp distal
Gm12455	predicted gene 12455	1790 bp upstream
Gm68903	predicted gene, 68903	within coordinates
Rr89080	regulatory region 89080	669 bp proximal