rs27875928 SNP Detail

Summary

• ID
  rs27875928
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:44380795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGGTGG ACAAGGACAT
  CAGAAGTAGT CACATAGCTC GACGGAGTAA GCGGACCACG GGCGTGTGCG TGCGTGCGCG
  CGTGCGTGCT TGCGTACTGG AGAGCTGGTC AGGCTGGACG GAGGCCCCGT GACTGGACAC
  AGGCAATTTG GAACCTTGTT AGATTATAAG TGAGTTAAGA TGAAAGAACA TTTGGAACCT
  K
  GAGAAGAGGT AAAGCGACAA TAGGAATAAA ATTTACTAAA ATGAAAACCG ACCGAGTTCC
  CTGGAAGCCA AATGAAATGG AAAACTTTGT AACTGTGATT TTCAGAAGGT TTTCCTCCCG
  ATGAGTTCCT GGAGCAATGA TCCTCAAATA TGAATGTCCA TTACAGTGAT CTGGGGGATA
  ATATTGATAA ATGAGCCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38002351	NES09462334	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	G	T	T	G		G	G	T	G		G
ss321100986	CHEV_4_44393667	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27875928					SNP	T	T	G	T	T	T	G	T	T	G	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38002351	NES09462334	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44380795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14212	CpG island 14212	31 bp distal
Gm68903	predicted gene, 68903	within coordinates
Rr89080	regulatory region 89080	1006 bp proximal