rs27884068 SNP Detail

Summary

• ID
  rs27884068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63519294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAGCCTC TTTGGCTTCC
  TATGACTTCC TGAGGCAAGT TCAACTGTCT AGTTCCTCCA CTCTGAGGGC CAGCCGCCCT
  TCTTTACTGT CCAAAGGTCA CCTGTCTGGA GAAGGCTGAC AAGCCGGTAC TCCGGGCTCC
  TCCCTCAGTC AGCAGCAGGT GATGGAGGTT ATTCCTTACA GCTCACTGGC TGGGCTCTCT
  Y
  CTAAATGAGC CGGACACCGT GGCTAACAAA TGTCCATTCA TTTTGCCAGG TCAGCTGACA
  GAAAACTTTA GCACATGCTG CCTGTGCACA GATTTTAGGA GAGTTAACTT TTGCTTTTGA
  AGGGTGTGTA CTGGATGGGC CTGCAGTACC CGAGACTTCA TTTCTCATCA GGAAAGTAAG
  AGAAACAGTT TAATCCGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	WSB/EiJ
ss38052487	NES09401479	PERLEGEN	MM_PANEL2	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	WSB/EiJ
rs27884068					SNP	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38052487	NES09401479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63519294 () rs orientation: forward

Symbol	Name	Function Class
Rr398310	regulatory region 398310	1104 bp upstream
Rr593584	regulatory region 593584	within coordinates
Tex53	testis expressed 53	within coordinates
Tssr42059	transcription start site region 42059	288 bp upstream