rs27884069 SNP Detail

Summary

• ID
  rs27884069
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63519169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTTTGG TGGTGTTGGA
  AAGAGGAAAA GGTATTGGGT ACCTGGCTGT GAGGCTTCAA CTCCCAGAAG CCCATTGTTG
  TTTAAGCAGT GGGGTCACAC TGGTCCCCGC CCACCCACAC CCACTGGCAA GCCTCTTTGG
  CTTCCTATGA CTTCCTGAGG CAAGTTCAAC TGTCTAGTTC CTCCACTCTG AGGGCCAGCC
  R
  CCCTTCTTTA CTGTCCAAAG GTCACCTGTC TGGAGAAGGC TGACAAGCCG GTACTCCGGG
  CTCCTCCCTC AGTCAGCAGC AGGTGATGGA GGTTATTCCT TACAGCTCAC TGGCTGGGCT
  CTCTTCTAAA TGAGCCGGAC ACCGTGGCTA ACAAATGTCC ATTCATTTTG CCAGGTCAGC
  TGACAGAAAA CTTTAGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	WSB/EiJ
ss38052488	NES09401478	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	WSB/EiJ
rs27884069					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38052488	NES09401478	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63519169 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398310	regulatory region 398310			1229 bp upstream
Rr593584	regulatory region 593584			within coordinates
Tex53	testis expressed 53			Intron
				Noncoding-Transcript-Variant
Tssr42059	transcription start site region 42059			163 bp upstream