rs27884070 SNP Detail

Summary

• ID
  rs27884070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63518105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGATCC AATAACTAAT
  ATCAAACATC TATGTTAGTC CATAGATAGT TTAGTTACAG GATTGGGTAA CTAATCCCCT
  TCTATACCCA CAAAGTCTCA AAGAAAGTGT CCTAGCAAGA AGTGTCTAGG TAGACTGAGT
  TCCCCAGAAG TAACTGACGT GTGCCTATTG TCCTATATGT GGACCTACTA CTGAAGGACC
  R
  CTGGCTGCCA GGCTGCATGT CTGCCTTGCA GCTGGGATGC CAGAGTGCTA CTGGCATGCC
  TTTAAGGAAG GCAAAATGCA GTTCAAGATA GGGATCTTAG CTCGAGTTCT CCTGAGTGAG
  AAACAGAGGG TCCAAGACAG ATGCTATAGT TATCAGTCTC CTGTATACCC AGACACTGCT
  GGGGACCATG AGGAGATAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss38052489	NES09401536	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs27884070					SNP	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38052489	NES09401536	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63518105 () rs orientation: forward

Symbol	Name	Function Class
Rr593584	regulatory region 593584	886 bp proximal
Tex53	testis expressed 53	within coordinates
Tssr42059	transcription start site region 42059	882 bp downstream