rs27884072 SNP Detail

Summary

• ID
  rs27884072
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63517826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTTAAGA CTGTATGGAA
  GCTAGATGCA TGCAGGACTA GGCCTAGGTT AGTGGACAGA GGCAGTACGC CACCAAGATG
  ACAGTTGTAT CAGGAGAGTA AAAGATACTT TTACAGACCA TAGTTTAGGT GCTTGTATGT
  CTCAATTTAC CTTCCAATAG CCTGTACTGT AGATGACATT TCCATTTTGT AGAGCAAGAG
  S
  GCTGTTAGCA TCACACTCAA GCTCCCAAAG TATCAGATTT CAAACTTTTC AGTAGGATGG
  TAGCCAGGGA TCTTTACTAA GAAGATCCAA TAACTAATAT CAAACATCTA TGTTAGTCCA
  TAGATAGTTT AGTTACAGGA TTGGGTAACT AATCCCCTTC TATACCCACA AAGTCTCAAA
  GAAAGTGTCC TAGCAAGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	WSB/EiJ
ss38052491	NES09401531	PERLEGEN	MM_PANEL2	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	WSB/EiJ
rs27884072					SNP	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38052491	NES09401531	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63517826 () rs orientation: forward

Symbol	Name	Function Class
Rr593584	regulatory region 593584	1165 bp proximal
Tex53	testis expressed 53	within coordinates
Tssr42059	transcription start site region 42059	1161 bp downstream