rs27888381 SNP Detail

Summary

• ID
  rs27888381
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:57071784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACC TATGCTACCC GCCAGGAATC
  K
  TTGGCGCCTG CGCAGTAGGA TCAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38063612	NES09349964	PERLEGEN	MM_PANEL2	f	SNP	T	T	T		G	T	T	G		G		T	G	G
ss45292109	mCV25078635	ABI	CRAMUS_MOUSE	f	SNP	T	T		G		T
ss146633781	ENSMUSSNP3771789	ENSEMBL	ENSEMBL_Sanger	f	SNP						T					G
ss320314310	CHEV_2_57034183	CHEVERUD	SCREENING_POP	f	SNP									T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27888381					SNP	T	T	T	G	G	T	T	G	T	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38063612	NES09349964	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:57071784 () rs orientation: forward

Symbol	Name	Function Class
4930555B11Rik	RIKEN cDNA 4930555B11 gene	59 bp upstream
BB557941	expressed sequence BB557941	18 bp upstream
Cpgi11661	CpG island 11661	within coordinates
n-TAcgc8	nuclear encoded tRNA alanine 8 (anticodon CGC)	306 bp upstream
n-TGgcc8	nuclear encoded tRNA glycine 8 (anticodon GCC)	622 bp downstream
Rr396968	regulatory region 396968	207 bp upstream
Rr557184	regulatory region 557184	30 bp distal
Rr557185	regulatory region 557185	within coordinates
Rr557186	regulatory region 557186	47 bp proximal
Tssr24122	transcription start site region 24122	10 bp upstream