rs27888382 SNP Detail

Summary

• ID
  rs27888382
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:57071202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCACGC TGCCGCAGCT
  TTATGGCCTC AGCCTAACAG GTTAAATGGA AACGACCTGA TGCTGCTCTG CCTACACCAT
  ATACCTACCC TGCTACCACT GAGCCTCACC TGGAATGGAA TCAGTTTTAA ATACACCTGG
  AAGAGATACA CTCGTCTTTT CATTCATAGC CCATCGAACC ATCTAGCTTG CATCCAACCA
  M
  CTGGAACTTT AGGGCTGAGG TGCGGTTAGG TCAGGGTAGA TGGAGGACAT TAAACGATAT
  ATATATATAT CAGTCAGTCC GACTGACCCA AGGTGTAAAT AGAAAAGGAA TGAAAAGCCG
  TCTACAGCAG GTTCTCCACC CTATCTTAAC ATTTATACAA GTCTAAGCCA CCAAGAAGGG
  GACAGCATCA TTTTGTTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38063613	NES09349963	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27888382					SNP	C	C	C	C	A	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38063613	NES09349963	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:57071202 () rs orientation: forward

Symbol	Name	Function Class
4930555B11Rik	RIKEN cDNA 4930555B11 gene	641 bp upstream
BB557941	expressed sequence BB557941	within coordinates
Cpgi11661	CpG island 11661	467 bp proximal
n-TAcgc8	nuclear encoded tRNA alanine 8 (anticodon CGC)	888 bp upstream
n-TGgcc8	nuclear encoded tRNA glycine 8 (anticodon GCC)	1204 bp downstream
Rr396968	regulatory region 396968	789 bp upstream
Rr557184	regulatory region 557184	within coordinates
Rr557185	regulatory region 557185	553 bp proximal
Rr557186	regulatory region 557186	629 bp proximal
Tssr24122	transcription start site region 24122	558 bp downstream