rs27888383 SNP Detail

Summary

• ID
  rs27888383
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:57071146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCTTTC TGCTCTGCCT
  TTTGGAGAGC ACAAGCGAAG GGTGAGGAAA CTTCAGGCCT TCACGCTGCC GCAGCTTTAT
  GGCCTCAGCC TAACAGGTTA AATGGAAACG ACCTGATGCT GCTCTGCCTA CACCATATAC
  CTACCCTGCT ACCACTGAGC CTCACCTGGA ATGGAATCAG TTTTAAATAC ACCTGGAAGA
  S
  ATACACTCGT CTTTTCATTC ATAGCCCATC GAACCATCTA GCTTGCATCC AACCACCTGG
  AACTTTAGGG CTGAGGTGCG GTTAGGTCAG GGTAGATGGA GGACATTAAA CGATATATAT
  ATATATCAGT CAGTCCGACT GACCCAAGGT GTAAATAGAA AAGGAATGAA AAGCCGTCTA
  CAGCAGGTTC TCCACCCTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss38063614	NES09349961	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs27888383					SNP	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38063614	NES09349961	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:57071146 () rs orientation: forward

Symbol	Name	Function Class
4930555B11Rik	RIKEN cDNA 4930555B11 gene	697 bp upstream
BB557941	expressed sequence BB557941	within coordinates
Cpgi11661	CpG island 11661	523 bp proximal
n-TAcgc8	nuclear encoded tRNA alanine 8 (anticodon CGC)	944 bp upstream
n-TGgcc8	nuclear encoded tRNA glycine 8 (anticodon GCC)	1260 bp downstream
Rr396968	regulatory region 396968	845 bp upstream
Rr557184	regulatory region 557184	within coordinates
Rr557185	regulatory region 557185	609 bp proximal
Rr557186	regulatory region 557186	685 bp proximal
Tssr24122	transcription start site region 24122	614 bp downstream