rs27888385 SNP Detail

Summary

• ID
  rs27888385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:57069860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAATTAC TGAGAGCCTG
  GCTTGCATCA TGTGCCAATT CTATTATCCA CACACTCAGG GGTAGACAGG AGAATTGTCC
  CAAGTTCAAG ACCAGCCTAG GCTAATTATC AAGCTTCTGC CTTAGAAGCC AAAACAAACC
  AACCAACAAA CAAACCAGAA TTGATTGAGA AAAAAGGGAA GGCTTCTGGT AGTAGCTAAA
  Y
  CGGCAGAAGG TTGAGGAAAG GAATCCTAAG GAGAATTCCA GAACAAGTTG CTAGAAGAAC
  ATGCATCTTT CCCAGTTTCC CTATTGAAAC CCTTGGGGTA GAGACTGATT CTGACTCCAA
  TTTCTGATTC AGAATCAGTT TAAGAAATGT GTGCTCCTCC AAGGAGCTGA AGGGGTCTGC
  AACCCTATAG GTGAAACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss38063616	NES09349983	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs27888385					SNP	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38063616	NES09349983	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:57069860 () rs orientation: forward

Symbol	Name	Function Class
4930555B11Rik	RIKEN cDNA 4930555B11 gene	1983 bp upstream
BB557941	expressed sequence BB557941	within coordinates
Cpgi11661	CpG island 11661	1809 bp proximal
Rr557184	regulatory region 557184	1166 bp proximal
Rr557185	regulatory region 557185	1895 bp proximal
Rr557186	regulatory region 557186	1971 bp proximal
Tssr24122	transcription start site region 24122	1900 bp downstream