rs27893219 SNP Detail

Summary

• ID
  rs27893219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:61804079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCCTCA ACTAATTGAA
  CAAATAACTC ATTCAGAAAT CCCGTGGACA CATTCAAGGC ACTTATAAGA TGCCAGGGTA
  TATATGGGTC CAAGAAGAAA AACAGGCTTA TTTGATTCAT GTCCCAGAGA GGGAATATTC
  TGTAGTCTCT CTAGCAGCCA AAGTGATAAT ACATACAGCT GACCCTGGCT CAACATCACT
  Y
  CTAAAACACC TGCTGTGTCA GTGTCAGAGT GTTCCCCACC ATTCCCCAGC CTTAGGCTGA
  CTGAACAAGT CTGCAATACT GGAGTCTCAT GTCTTGCTTT AATACAATTA CACCTTCCTG
  TCAGACAACT GAGAACTGCC AACCCTCAGA GCTGCTGAAG AGCCTACTTT GCAACTCAAT
  CCAAATGAAA CAAGCAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38057646	NES09402360	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27893219					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38057646	NES09402360	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:61804079 () rs orientation: forward

Symbol	Name	Function Class
Rr376581	regulatory region 376581	1035 bp upstream