rs27893220 SNP Detail

Summary

• ID
  rs27893220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:61804047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAAATG ATTTAATCAC
  TTTGACTTGT GTCTCACCCT CAACTAATTG AACAAATAAC TCATTCAGAA ATCCCGTGGA
  CACATTCAAG GCACTTATAA GATGCCAGGG TATATATGGG TCCAAGAAGA AAAACAGGCT
  TATTTGATTC ATGTCCCAGA GAGGGAATAT TCTGTAGTCT CTCTAGCAGC CAAAGTGATA
  R
  TACATACAGC TGACCCTGGC TCAACATCAC TCCTAAAACA CCTGCTGTGT CAGTGTCAGA
  GTGTTCCCCA CCATTCCCCA GCCTTAGGCT GACTGAACAA GTCTGCAATA CTGGAGTCTC
  ATGTCTTGCT TTAATACAAT TACACCTTCC TGTCAGACAA CTGAGAACTG CCAACCCTCA
  GAGCTGCTGA AGAGCCTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38057647	NES09402359	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27893220					SNP	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38057647	NES09402359	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:61804047 () rs orientation: forward

Symbol	Name	Function Class
Rr376581	regulatory region 376581	1067 bp upstream