rs27893221 SNP Detail

Summary

• ID
  rs27893221
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:61804017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGACTTGT GTCTCACCCT CAACTAATTG
  AACAAATAAC TCATTCAGAA ATCCCGTGGA CACATTCAAG GCACTTATAA GATGCCAGGG
  TATATATGGG TCCAAGAAGA AAAACAGGCT TATTTGATTC ATGTCCCAGA GAGGGAATAT
  K
  CTGTAGTCTC TCTAGCAGCC AAAGTGATAA TACATACAGC TGACCCTGGC TCAACATCAC
  TCCTAAAACA CCTGCTGTGT CAGTGTCAGA GTGTTCCCCA CCATTCCCCA GCCTTAGGCT
  GACTGAACAA GTCTGCAATA CTGGAGTCTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38057648	NES09402358	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	G		T	T	T	T		T
ss321142050	CHEV_4_61546814	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27893221					SNP	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38057648	NES09402358	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:61804017 () rs orientation: forward

Symbol	Name	Function Class
Rr376581	regulatory region 376581	1097 bp upstream