rs27893227 SNP Detail

Summary

• ID
  rs27893227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:61803210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTCTTT AAAATATGGA
  GGAGTTGGTG TGGAACTAGA ATGAATGAGG CATGACAATT GGCTCTCTCT AGGTCTACAA
  GTGTTTGGAG GAAGCTCTTC TAGGGGATTA TCACATTCTT CTTTCCTGTT CCTCCTCCTC
  CTCCTCCTCC TCCTCCTCCT CCTCCTCTTC CTCTACCTCC TCCTTCTCAT ATTTCCACCC
  Y
  CTTCTTTTTG GTTGATTATG GTGTCTGCAC ACATGTGCAC ATGCTTCTGC CTTTGATAGT
  AAATGCAGAA GTCAGCACAG GACACCAGTC CTCTCCCTCT ATGTCTTTTT ACTTCATCCC
  CTTGAGACAG GGTCTCCCTC TGAATCTGGG AATTATTGTG TTTCAGATAG GCTGGCTGGC
  CACTAAGTCC CAGCAATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38057654	NES09402462	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27893227					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38057654	NES09402462	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:61803210 () rs orientation: forward

Symbol	Name	Function Class
Mup-ps18	major urinary protein, pseudogene 18	1677 bp upstream
Rr376581	regulatory region 376581	1904 bp upstream