rs27899656 SNP Detail

Summary

• ID
  rs27899656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50961706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTA GCACTTCAAC TGTATCCTCA
  Y
  AGGGCAACCC GCATATAAAT AGGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss38079476	NES09345876	PERLEGEN	MM_PANEL2	f	SNP			C	C	T		C	C
ss146549264	ENSMUSSNP6275823	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320293368	CHEV_2_50927214	CHEVERUD	SCREENING_POP	f	SNP						T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs27899656					SNP	T	T	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38079476	NES09345876	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50961706 () rs orientation: forward

Symbol	Name	Function Class
Gm32360	predicted gene, 32360	1291 bp downstream
Rr556806	regulatory region 556806	769 bp proximal
Rr556807	regulatory region 556807	1435 bp proximal