rs27900001 SNP Detail

Summary

• ID
  rs27900001
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:51162824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCCCCCA CTCCCCGACC
  CCCCACTCAT CCCTGCCCTG CCCTGCCCTG CCCTGCCTAC CTAGAAATTC TAATTCACTG
  GAAGACTGAC CAAGCAGAAG GTAGGACTCA TGGTTCCTTT AATGAGATAA TGTGCTGATC
  CATCCCTGGA GCTCCCTTTA ATGAAGCCAT TTCCACAGCT CCTGTCACAC GGCCCTTTAG
  W
  GTCTGACCTT CTGGAGTTCC TCAGAGAAGC GCCACCTTCC CTTTTCTTTC TGTCCTTGGC
  TTGGGAAACT GCGTTGTCTG GAACTCTGGG ATGTCCCACT CCCCTGGCCT CCTCACCTTT
  GTGCCACGCA GCTGTTTTTG ACCTCCATCG CAAGGTCACT GCTTTTTTTC TTTTCTGTCT
  CTCTCCTCCA GGTTGCTGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38078520	NES09338254	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27900001					SNP	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38078520	NES09338254	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:51162824 () rs orientation: forward

Symbol	Name	Function Class
Gm13497	predicted gene 13497	within coordinates
Rr556832	regulatory region 556832	499 bp proximal