rs27900007 SNP Detail

Summary

• ID
  rs27900007
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:51162013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGTAAAA TGAATAAAAA
  ATAAAAACAG CAAAACAAAA GTAAGGTGAG CCGAGTGAAG ACAATGAACT GGACTACTCA
  GTATAGAAAG ACAGTTCATT TAGCCGTGTC TGCCCGGCTG TGTCTCAGGG GACAGAGAAC
  CGTGAGTAGC AGGAAAGGGT CAGTTTTAAG GGGCAGGCTG TTAGTGTCAG TCAGGAACTA
  S
  CTGTCCTTGA GTTCGGTAGT TGACCTTTGG GGGCAGATAA GAGAACTAGT GGTTTTCCTG
  ACAAACAGAA ACCCACCCTA TGAGATTCCT GAGGCATTCT GAGTTTAAAC TTGTATTTAC
  CCCATAACAA TCCTCCCCTT TATCCAGTCA GGTCAGAGTC CTTCTGATTA GGACATTTTT
  ACCAGCACTG ATATTTTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38078526	NES09338248	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27900007					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38078526	NES09338248	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:51162013 () rs orientation: forward

Symbol	Name	Function Class
Gm13497	predicted gene 13497	within coordinates
Rr556832	regulatory region 556832	1310 bp proximal