rs27901689 SNP Detail

Summary

• ID
  rs27901689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:49453295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGTAATC AGTCAGTCAG
  TGAACTGTCA GCTTTCCAGC TCAGCTATTT TGGAAGGAGG CTATTTGCAG CTATCAGACC
  CATATCTGAT TGTGAAATAT GGACTCTCTC TCCAGAGGTT GATGCTCAAC ACCAATTATC
  CAGAGGTAGT TTGGACTGAG CTAATTTGTC ATCTATAAAC CGATCTGCTC TGGCTGCTTC
  R
  AGGAGATGTT TTCATGTTTA CAAATGAATG AAAAACCCCT TCTCCAAGCT TTTGCCCTTT
  TCCATGTGTC TTGGGGAATA GATGGCACAA GACTTTTAGA GCTGAAAAAG AACTCTTTGA
  ATGATGTCAT CTGTTCCTCA GCTGGGTGTC CGACAGGTGA AAGCTTGTCT GAATCAGAGC
  TGAGTGGCAC CCAATCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38084408	NES09349235	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27901689					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38084408	NES09349235	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:49453295 () rs orientation: forward

Symbol	Name	Function Class
Gm74675	predicted gene, 74675	within coordinates
Tssr17675	transcription start site region 17675	752 bp downstream