rs27901700 SNP Detail

Summary

• ID
  rs27901700
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:49452012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAAAAT AATAATTAGT
  GCTTCAGTCT TATTGACGTT TAACTTATTA ATATGATCTT GACTTAATTG TGTTATATCA
  TATACATCTA GAAATTCATT CATTTTTCTT TTTTACATTT GTCTGTGTGT GTATGTGTGT
  GTGCATGGGT TGCACATAGA ATGGGGAGGG TGTGGAAGTG AGACGAATAA CTTTTCAGAG
  S
  TGGTCTGTTG GTGGGAATGC GATATCAAAG CTACTCTCTA TGATTGTGAC TCTGCATGTC
  TAATACTTAT TTGTCTCATG AAGTCTGCTG CACCTGGGTT CAGCGTGCAG ATATTCAGAA
  CTGTAATGTG CTCCTGGTGG CCTGTTGCCT TAGTCAGTAC GGATGGCCTT TTTTATGTCT
  TCTGACTTTG GGTTAGGATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38084419	NES09349308	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27901700					SNP	G	G	G	G	G	G	C	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38084419	NES09349308	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:49452012 () rs orientation: forward

Symbol	Name	Function Class
Gm74675	predicted gene, 74675	506 bp upstream
Tssr17675	transcription start site region 17675	498 bp upstream