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rs27901701 SNP Detail
Summary
  • ID
    rs27901701
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:49451064 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAATCTCTAG GTTGCTTTTG
    GGAAGATAGT CATTTTCACA ATATATTTTC AATCCACGAG CATGGGAAGC CCTTTCATAC
    TCTTGAGGCT GCCTCAGTTT TCATCATCAG GACTTTCGCT GTAGAGCTTT TCACCTCCTT
    ACACACTTAT GTGATATATT ACACGTACCG AACCATCCCT GCATCTTATG TGATATATTA
    Y
    ACTACCTGAA CCATCCCTGC ATCTGTATAA TGAAGCCAGT TTGATCATGG TGAATTCTTT
    TAATATTACT AATTTTGTTG TTTATTTATT TATTTATTTA TTTATAGACA AGATCTCACT
    ATCTCATCAT AGTTGGTCTA GAACTCATTA TGTGGACCAG GCTGGCCTCA GAGTCACAGC
    AATCTGCCAC TTCGTGCAGG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss38084420 NES09349327 PERLEGEN MM_PANEL2 f SNP T T T T C T T T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs27901701 SNP T T T T C T T T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38084420 NES09349327 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:49451064 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm74675 predicted gene, 74675 1454 bp upstream
Tssr17675 transcription start site region 17675 1446 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory