rs27904054 SNP Detail

Summary

• ID
  rs27904054
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63916330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATCTTTT CTTAGAAAGG
  TTCTTACTTT AAGTGCACTT CAGAAATGGG CTTAGATGAC TTCGGCATAA GATGACTAGA
  TCAGTTTCCA GATCTGAAGG GATCCGACTC GGAATTGGGT ATTACTTAAT GTCTCTGAGG
  GCAGTATTGA AAAGATTTCT CTGAAAAGTT CTGCTCTCCT GCACCAAAAA AATACCCACT
  K
  CCTGTGCTTT GTCTTCCCAT GGTTGGGTTG ACAACTGTGA AGGCGATTCT TGATTGTCAA
  CTTGACTACA TTTGGAATGA ACTAAAACCT AACCAGCTGG ACACACCTGT CGGGATTTTT
  TTCTTCATGA AATCATTTGA AGTGGGAAGA CCCACTTGTA ATCCAGCTCT CTTGAGACAG
  GAAGATATAT CTTTAATCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38050982	NES09385547	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27904054					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38050982	NES09385547	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63916330 () rs orientation: forward

Symbol	Name	Function Class
8030451A03Rik	RIKEN cDNA 8030451A03 gene	within coordinates
Tnc	tenascin C	within coordinates
Tssr37594	transcription start site region 37594	241 bp upstream
Tssr42083	transcription start site region 42083	1022 bp upstream
Tssr42084	transcription start site region 42084	950 bp upstream