rs27904058 SNP Detail

Summary

• ID
  rs27904058
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63914953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATGATGT TACGTAATAG
  ATTCCTGGCT TGGCTTGCAC TCTCCCACTG TCTTAACCCT TGGCATGAAG CATGGCTGCA
  TCACAAAGCA AGGCTGTGTG AAGTCAGCTT GCTTACTTTT AATTAAGAGT GAGTCTGTAT
  TGCTTAGTAC ATGTGCAAAG CAGGGCCCAC TGTTAGTTGT TCTTTTTAAC TGTGTAAGAA
  S
  GATCTTCAGT TATTGCTGAT TAAGAAAGTC TAACTTTGGG GTATGGAAAA ATTCACTGTT
  TGGGATTCAG TACAGTCTCA GCTCTAATTT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTATGA GAGAGAGAGA GAGACAGAGA GAGAGAGGGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GTGTTTATAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38050986	NES09385639	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27904058					SNP	C	C	C	C	G	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38050986	NES09385639	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63914953 () rs orientation: forward

Symbol	Name	Function Class
8030451A03Rik	RIKEN cDNA 8030451A03 gene	within coordinates
Tnc	tenascin C	within coordinates
Tssr37594	transcription start site region 37594	1618 bp upstream
Tssr42083	transcription start site region 42083	339 bp downstream
Tssr42084	transcription start site region 42084	413 bp downstream