GTGCAGTGGA ACCAGTGACC ACGCTCTGCC TCGACTTCTG GTTTCCTGTA AAATAAACAC ATTACTTTAT ATTTTTAGGG AACAAAAAAA AAGTGCTGCT ATAGGGTTCA AAATTTTCAT TCTGAACACT TTTCCAAAAC CAACCCCAGA GAGCATTTTA AATATCCTGG TCATATCTTT GGATCTGTAA AATAGACCTT Y TAGTATGGCA CCTGTTAAAA TGCAAAGCAG ATTCCTTCAA GGCAGAAAAA CAGTTTGACA ATAGCAGTGT AGAATTTGCT CATTCAGACA CATCTATGAA AATGCGAAGA GTCACAGAAT TCACCTCCAA GCTGCTCGCT GGTGAACCTG CAGTGACTAG TCCTGGCCAG CCCAGTTGTT TGAACATCAT TCCTATACAA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38083650 | NES09340878 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | C |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
||||
rs27904328 | SNP | T | T | T | T | T | T | T | T | T | T | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38083650 | NES09340878 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr2:49661709 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Kif5c | kinesin family member 5C | mRNA-UTR | ||||||
Rr556669 | regulatory region 556669 | 864 bp distal | ||||||
Rr556670 | regulatory region 556670 | 1537 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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