rs27904333 SNP Detail

Summary

• ID
  rs27904333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:49660090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTGAGA TTCCTGCATA
  TTTACTCTGT GGGTCCAGGA GAAATGGCTG TTCTTAGAAA GCACGAACTG TCCCCTCACC
  TGCCAGGTTT CTCTTCTGTT CCATGCTCCT CTTTCCTTTT TCTGTATTCA TGCATAATTT
  ATGTTGTGTT TATTTACACA AAATATGTAG TGCTGCTTCC ACTATTCTGA ATGAGGAGGC
  Y
  GTAGAGAAAC AACTTGGAGA CAGTACTGTG GCAGGGCTGT GAGGCCTCAC AGGTGGACAG
  AGGCTGGAGG CAAACAGGAA GTACAGTGTG TCAGGTTATG GAGTCTTGTT CAAACTCGGG
  AGCAGATGAG TTTTACTTTG GCTCCATCAT ATTTCCTGTT GTGCCACTTC CTTTAGCTTC
  CTAGGACAAG GCTGTGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38083655	NES09340873	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27904333					SNP	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38083655	NES09340873	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:49660090 () rs orientation: forward

Symbol	Name	Function Class
Kif5c	kinesin family member 5C	Intron
Rr556668	regulatory region 556668	551 bp distal
Rr556669	regulatory region 556669	470 bp proximal