rs27904335 SNP Detail

Summary

• ID
  rs27904335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:49659668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCACAGC ATTTGTGTGC
  TGAATGCTTC CTGTGTCAAC ATGGGTTGGC TGCTGTCATT GCTGTAGGCC ATAGTCTCCA
  GGTAAGGTCT GCAGCCAGCA CCTCCCTGCC TGCAGGTACA CAGGAAGACC AATCCCTTCT
  GCCCAGTGGG ATGGTGCGTT TGAAGGAACA AACCCTCAGG TGAAGTAGGA TCTCGGTGCT
  R
  CTCTCCAAAA GCCTTCCTTT GGTTTTCAGC TCACAGTAGA TTGTAAATGA CTGCATCATT
  CTGCACTCAG CAGGAAGGAC AAACTCTCAA GAAAGGTCAA ATGTGAGACT CATCCTTCCT
  ATAAACTGCT TTATCTCTCT GTAACTTCTA AAAATACAAG ATTATCATCA AAGGTTGTTT
  CTACTCCCTT TAATCAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38083657	NES09340870	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	G	G	G	G	G
ss45276591	mCV25117606	ABI	CRAMUS_MOUSE	f	SNP		A	G					G
ss146526561	ENSMUSSNP3129154	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27904335					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38083657	NES09340870	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:49659668 () rs orientation: forward

Symbol	Name	Function Class
Kif5c	kinesin family member 5C	Intron
Rr556668	regulatory region 556668	129 bp distal
Rr556669	regulatory region 556669	892 bp proximal