rs27904342 SNP Detail

Summary

• ID
  rs27904342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:49658993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGGGTT ATGCACTTCT
  CCTGGTCAAA AATGCGGAAC GGTTCCTCCG TGGCAGATTG TATCGCCACG ATAAGCAAAG
  GCAACTGGTA ATTCTTATAA ATGGGGATTG AACTGTAGAA AGGCGCAGGG AAAGATAAAA
  CTATGTACTG TTTGGATTAA GCTTAAATCT ACTGCAAGCA GTTTCAAAAG CCAAAGTTGA
  R
  GGTTGGAGTC CAAATATGTC TTGCAAAACC CTTCTGTGTA TAATTAGCTT CTTTCTTCAG
  CCTTCTCCAC CCCTTCTAGA GCAAGGTGAT TTTATTTCCT TCTAAATCTG GCCACAGGTC
  CCCACTCTGA ATTGCTGGCC TCAGGTTGGC TGAGCCTCGG GTCAGTGCAC TGCCTGGTCT
  CTTGACCTGG TCCCTTGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38083664	NES09340863	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G	G	G
ss45333299	mCV25117618	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	G
ss146526549	ENSMUSSNP6307487	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27904342					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38083664	NES09340863	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:49658993 () rs orientation: forward

Symbol	Name	Function Class
Kif5c	kinesin family member 5C	Intron
Rr556668	regulatory region 556668	67 bp proximal
Rr556669	regulatory region 556669	1567 bp proximal