rs27904343 SNP Detail

Summary

• ID
  rs27904343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:49658917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCTGGT GGCCTGGAGA
  CTACCACCCA GAACTCAGAA GGCGACGCGG TGGCACCAGG AAGACCTTGC TTCAGTAGTC
  TGGGTTATGC ACTTCTCCTG GTCAAAAATG CGGAACGGTT CCTCCGTGGC AGATTGTATC
  GCCACGATAA GCAAAGGCAA CTGGTAATTC TTATAAATGG GGATTGAACT GTAGAAAGGC
  R
  CAGGGAAAGA TAAAACTATG TACTGTTTGG ATTAAGCTTA AATCTACTGC AAGCAGTTTC
  AAAAGCCAAA GTTGAGGGTT GGAGTCCAAA TATGTCTTGC AAAACCCTTC TGTGTATAAT
  TAGCTTCTTT CTTCAGCCTT CTCCACCCCT TCTAGAGCAA GGTGATTTTA TTTCCTTCTA
  AATCTGGCCA CAGGTCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38083665	NES09340862	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	G	G	G	G	G
ss45233378	mCV25117619	ABI	CRAMUS_MOUSE	f	SNP		A	G					G
ss146526545	ENSMUSSNP3066375	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27904343					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38083665	NES09340862	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:49658917 () rs orientation: forward

Symbol	Name	Function Class
Kif5c	kinesin family member 5C	Intron
Rr556668	regulatory region 556668	143 bp proximal
Rr556669	regulatory region 556669	1643 bp proximal