rs27904345 SNP Detail

Summary

• ID
  rs27904345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:49658624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCGGGT CTGCTTGTGC
  ATCTGTTTCT CTGCATGGCC TTGCCTGGAG TATATGAAGA CAACAGCTAC CCTTATCACT
  TCAGAGAAGA TTCTTGGCTG TTTCGAGAAA GGATTCAAGG GATACAAGGG TCCTTATGTA
  GGAGTCTGAC AGGACAATAT GGAAGGCATT AAAGGAAACC CAGACAAGAA CTTAGCCAAA
  Y
  TTGACCTTTA GAGTACTAAT CTTATAGCTG TTGTGAGGTC AAAAGGAAAG TAGTGTGTCT
  GTAGGGACCA GGACAGAGGG ACCTGAGGTG GGCACTGCTG GTGGCCTGGA GACTACCACC
  CAGAACTCAG AAGGCGACGC GGTGGCACCA GGAAGACCTT GCTTCAGTAG TCTGGGTTAT
  GCACTTCTCC TGGTCAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38083667	NES09340860	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	T
ss146526529	ENSMUSSNP2265938	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27904345					SNP	T	T	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38083667	NES09340860	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:49658624 () rs orientation: forward

Symbol	Name	Function Class
Kif5c	kinesin family member 5C	Intron
Rr556668	regulatory region 556668	436 bp proximal
Rr556669	regulatory region 556669	1936 bp proximal