rs27913239 SNP Detail

Summary

• ID
  rs27913239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:52125174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC TGACCTTCTC TAAAACTTTT
  Y
  TCTCTCAACT TTACTCTTCT TTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	PWD/PhJ
ss38074861	NES09354036	PERLEGEN	MM_PANEL2	f	SNP		T	T			C	T
ss45236645	mCV23719373	ABI	CRAMUS_MOUSE	f	SNP	C			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	PWD/PhJ
rs27913239					SNP	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38074861	NES09354036	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52125174 () rs orientation: forward

Symbol	Name	Function Class
Neb	nebulin	Intron
Rr556918	regulatory region 556918	1481 bp proximal
Tssr24047	transcription start site region 24047	430 bp downstream