rs27914815 SNP Detail

Summary

• ID
  rs27914815
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52314318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTTCTAA TAACCTAAGA
  AAGAAAACGA CCTTAGGCTT GACCTTTACC ACTGAGACAA ACGGCGCAAA GGAGAGACAC
  TCCATCACTA TTCCGCAGCG AGGGTCTCCC CGCCCATCCC CCCCACCCCC ACCCCCACCC
  CCACCCCCCA AAGCGAACCA GACGGATCCA GCACTAGTTC CAGTTTTCCG CATTCTGCAA
  R
  CCGTGGGCTC GGTGGCGCCG CTAGGGTCAG GGCCCTCGGT CCTCACTCTA GAACCCCAGC
  TGTTGCCCGT GCGGCCCAAA CACAATTGCG GGCAGGCGAC GGGGATGGAA GCAGGCCAGG
  CAGCGCGCTG GGCCCTCGGC GTGGGGCAGG GCACCTTTTG CGCTCGCGAT CAAATCGGAG
  AAATGGGTGT ATGGCGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38073936	NES09346905	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27914815					SNP	G	G	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38073936	NES09346905	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52314318 () rs orientation: forward

Symbol	Name	Function Class
A430018G15Rik	RIKEN cDNA A430018G15 gene	706 bp upstream
Arl5a	ADP-ribosylation factor-like 5A	within coordinates
Cpgi11647	CpG island 11647	within coordinates
Rr556939	regulatory region 556939	within coordinates
Rr556940	regulatory region 556940	585 bp proximal
Rr556941	regulatory region 556941	650 bp proximal
Tssr494	transcription start site region 494	611 bp downstream
Tssr17726	transcription start site region 17726	698 bp upstream
Tssr17727	transcription start site region 17727	935 bp upstream
Tssr24072	transcription start site region 24072	489 bp downstream
Tssr24073	transcription start site region 24073	505 bp downstream
Tssr24074	transcription start site region 24074	520 bp downstream