rs27914817 SNP Detail

Summary

• ID
  rs27914817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52313215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTATTGAC TGGTAATTTC
  CTAGGAACTG GACTCTATTA ATCCTCTTGT TAATTTTCAA ACTCTGAGTA AACGTTCAGG
  CAAATGCTAC TACAAAATGC AGAGCACAAG ATCTGTGCTG CTACCAATGC ATTCCTGCTA
  TCATGTGCAA CTAGGTGAGT TTCTTTTAAA GTTCTAATTC ATTTTTTAAG TTACAGCAAC
  R
  GTTTGGTCAC TGACTCAAAG AAGAAAGTGA GACCAGTACC AGAGACACTT TAAAGCAAAA
  GGTCTTTCTA AACCAAAGCA GAACTGAAAC ACTAGTCTCA CTAAATTCAA GACTGTAGAG
  GACAGAACTA GAATAAGAAC ACTTATTACC CACACAAATA TCACCAGTTC TACAACAATG
  TAACCTTTAG TACTTCAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38073938	NES09346903	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27914817					SNP	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38073938	NES09346903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52313215 () rs orientation: forward

Symbol	Name	Function Class
A430018G15Rik	RIKEN cDNA A430018G15 gene	1809 bp upstream
Arl5a	ADP-ribosylation factor-like 5A	within coordinates
Cpgi11647	CpG island 11647	988 bp proximal
Rr556938	regulatory region 556938	1497 bp distal
Rr556939	regulatory region 556939	268 bp proximal
Rr556940	regulatory region 556940	1688 bp proximal
Rr556941	regulatory region 556941	1753 bp proximal
Tssr494	transcription start site region 494	1714 bp downstream
Tssr17726	transcription start site region 17726	1801 bp upstream
Tssr24072	transcription start site region 24072	1592 bp downstream
Tssr24073	transcription start site region 24073	1608 bp downstream
Tssr24074	transcription start site region 24074	1623 bp downstream