rs27915613 SNP Detail

Summary

• ID
  rs27915613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50905366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGGTAGA TAGTCAGATG
  GTTCTACAGC TGGTTGACTA ATTGGCTTGT TCATTCATTC ACTCATTCAT TCATTCAACG
  AATATTGTTT GAGAACTTCT GGTAGGAAAA AGAAAGCATG GTTGGAAAAA GAAAACATTT
  AGCTAGTAGC TAGTTAGGAA GAAAAAAATA ATAATACATA ATTTGGAACA ATGATGGGGC
  Y
  ATTGGTGTGG GAATGCATGG GAGGAAGTAG TTAACCGTAC TTGAGGGAGG TGTCCCAGAA
  AGGTAAGTAC AGTTGAACTA CAAAGACATA GAAGGGAAAG GAATGTTGCT AAAACCAAGA
  AATCACAAGA AAAGACATGT GCAGAGCCAC AGTAGGCTAT AATTTCTGAA TGCTTCCTAC
  GTCCCGGGAG CTGTTCTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ
ss38079841	NES09348448	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ
rs27915613					SNP	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38079841	NES09348448	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50905366 () rs orientation: forward

Symbol	Name	Function Class
Rr556799	regulatory region 556799	99 bp proximal