rs27915618 SNP Detail

Summary

• ID
  rs27915618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50904915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGCTGAC AAGAAAGAAA
  GGGCTGAGAA CAAGGCTTCT CTTTCTAGGA TTTAACTCTA TGGATGTCCA AGACCCCCTG
  CCAAATAACA CCAGTATGTC AAGACGACAT GAAAAAAGAT CAGTCAGAAA CTTGTGATGC
  CATCGCTTCC CCAATGGGCA TCTGCATTAG GAACTTCAAC ACTTGAACTT TTGGAGGAAG
  Y
  GCTTCATATT TAAACCTTGG TGTTATCATT TTACTGATGG ATAAATCTCC TGCATGAATG
  TCAAGGGAGT GGTGCTGACT TAGCTCCATC ACTGACTTAG CTCACTCAGC AAACTGAATC
  AGAACAGGGA AGATCCTTTC ACTCGGTAGT TGATGGAGAA CACTGAATCC TTAGTTCCAT
  CATGACATTC CATCCACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38079846	NES09348443	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27915618					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38079846	NES09348443	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50904915 () rs orientation: forward

Symbol	Name	Function Class
Rr556799	regulatory region 556799	550 bp proximal