rs27915620 SNP Detail

Summary

• ID
  rs27915620
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50904784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAACAA ACAAGAAAAC
  ATAAAGTCTG TAAAGCTCAT TGCTTCAGGG ATTTCAGTCT AGTCTGTATG CTCCATTGTT
  GTGAGTCTGA GGTGAGAGGA ACATGTGGTA GAAGAGAATA ATTCACCTGA TGATAGCTGA
  CAAGAAAGAA AGGGCTGAGA ACAAGGCTTC TCTTTCTAGG ATTTAACTCT ATGGATGTCC
  W
  AGACCCCCTG CCAAATAACA CCAGTATGTC AAGACGACAT GAAAAAAGAT CAGTCAGAAA
  CTTGTGATGC CATCGCTTCC CCAATGGGCA TCTGCATTAG GAACTTCAAC ACTTGAACTT
  TTGGAGGAAG CGCTTCATAT TTAAACCTTG GTGTTATCAT TTTACTGATG GATAAATCTC
  CTGCATGAAT GTCAAGGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38079848	NES09348439	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27915620					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38079848	NES09348439	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50904784 () rs orientation: forward

Symbol	Name	Function Class
Rr556799	regulatory region 556799	681 bp proximal