rs27920438 SNP Detail

Summary

• ID
  rs27920438
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63327104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGATAC CAGCTCGGTT
  CTCTCCAGGC TCCCCTGGAC ACGGTCCCAT GTCACCCTCC CATATCCCAA AGCTCTGCAC
  AGGCTGCTGG GTGAACCTAA GGGCCCAGGC CTCTCTTTTC CCTGCCCAGA GCTGTAGGGA
  CGAACTTCAG ACGAATGGTT TAATCCCTCT GAACCCTTAG ACTGCACAAC AGGGACAGCG
  S
  CGTCCACCTA GTGGCAGTGC TAGGAAATGA AGCGACAAAA TCTAGCAGGG CTCAGTACTG
  GGCAGTGGGA AGATGACAGC CCCAACCCAC CACAGCTACC TCACTCCTAC AGTGAGACTC
  GTGGTACAGT GACCTGAAGT CAGTGCACTA GCCATTGTCA CCAATGTCTA TGACTGTTGA
  TCTGTTCTTT CTCTGACTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38053158	NES09389461	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27920438					SNP	G	G	G	G	G	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053158	NES09389461	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63327104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	1006 bp proximal
Gm57078	predicted gene, 57078	within coordinates
Rr398307	regulatory region 398307	1249 bp upstream
Rr398308	regulatory region 398308	1770 bp upstream
Rr593544	regulatory region 593544	339 bp proximal
Rr593545	regulatory region 593545	1793 bp proximal
Tssr37559	transcription start site region 37559	738 bp upstream
Tssr42046	transcription start site region 42046	1126 bp downstream
Tssr42047	transcription start site region 42047	1143 bp downstream
Tssr42048	transcription start site region 42048	1321 bp downstream
Tssr42049	transcription start site region 42049	1347 bp downstream
Tssr42050	transcription start site region 42050	1816 bp downstream
Tssr42051	transcription start site region 42051	1838 bp downstream
Tssr42052	transcription start site region 42052	1878 bp downstream