rs27920439 SNP Detail

Summary

• ID
  rs27920439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63327045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTCCCC TCAGCCGGGG
  ATCCTGGGTG GGCTGAAAAA TGCTAGCTCA GAAGGTATTC TAGAGATACC AGCTCGGTTC
  TCTCCAGGCT CCCCTGGACA CGGTCCCATG TCACCCTCCC ATATCCCAAA GCTCTGCACA
  GGCTGCTGGG TGAACCTAAG GGCCCAGGCC TCTCTTTTCC CTGCCCAGAG CTGTAGGGAC
  R
  AACTTCAGAC GAATGGTTTA ATCCCTCTGA ACCCTTAGAC TGCACAACAG GGACAGCGGC
  GTCCACCTAG TGGCAGTGCT AGGAAATGAA GCGACAAAAT CTAGCAGGGC TCAGTACTGG
  GCAGTGGGAA GATGACAGCC CCAACCCACC ACAGCTACCT CACTCCTACA GTGAGACTCG
  TGGTACAGTG ACCTGAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38053159	NES09389459	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27920439					SNP	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053159	NES09389459	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63327045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	1065 bp proximal
Gm57078	predicted gene, 57078	within coordinates
Rr398307	regulatory region 398307	1308 bp upstream
Rr398308	regulatory region 398308	1829 bp upstream
Rr593544	regulatory region 593544	398 bp proximal
Rr593545	regulatory region 593545	1852 bp proximal
Tssr37559	transcription start site region 37559	797 bp upstream
Tssr42046	transcription start site region 42046	1185 bp downstream
Tssr42047	transcription start site region 42047	1202 bp downstream
Tssr42048	transcription start site region 42048	1380 bp downstream
Tssr42049	transcription start site region 42049	1406 bp downstream
Tssr42050	transcription start site region 42050	1875 bp downstream
Tssr42051	transcription start site region 42051	1897 bp downstream
Tssr42052	transcription start site region 42052	1937 bp downstream